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Learned Metric Index

Website: https://github.com/Coda-Research-Group/LearnedMetricIndex

PhD Project: Similarity search index for complex data using machine learning and probability-based navigation.

AlphaFind

Website: https://alphafind.ics.muni.cz/

Fast structure-based similarity search across 500M+ predicted protein chains and domains (AlphaFold DB, TED).

MD-Find

Website: https://www.mdfind.dyn.cloud.e-infra.cz/

Similarity search engine for molecular dynamics simulation files of protein data, indexing thousands of trajectories from public repositories.

Learned indexing in high-dimensional data Dissertation

Published in Ph.D. dissertation, Masaryk University, 2026

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AlphaFind v2: Similarity Search in AlphaFold DB and TED Domains across Structural Contexts

Published in Nucleic Acids Research, 2026

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MolViewStories: Interactive molecular storytelling

Published in Protein Science, 2026

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AlphaFind v2: Fast Structure-Based Search in Predicted Protein Chains and Domains Permalink

Published: April 23, 2026

Agentic systems for software development Permalink

Published: October 01, 2026

Teaching experience 1

Undergraduate course, University 1, Department, 2014

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Teaching experience 2

Workshop, University 1, Department, 2015

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