Portfolio item number 1
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Posts by Collection
portfolio
Portfolio item number 2
Short description of portfolio item number 2
projects
Autoresearch Progress Visualizer
Published:
Extended autoresearch (github.com/karpathy/autoresearch, training a language model from scratch with agents) with an inference and presentational layer. Deployed an app & wrote a blog post about the experience.
publications
AlphaFind: discover structure similarity across the proteome in AlphaFold DB
Published in Nucleic Acids Research, 2024
Gromacs MetaDump: a tool for extracting GROMACS simulation metadata
Published in Journal of Chemoinformatics, 2025
AlphaFind v2: Similarity Search in AlphaFold DB and TED Domains across Structural Contexts
Published in Preprint (BioRxiv), 2026
talks
Talk 1 on Relevant Topic in Your Field
Published:
This is a description of your talk, which is a markdown file that can be all markdown-ified like any other post. Yay markdown!
Conference Proceeding talk 3 on Relevant Topic in Your Field
Published:
This is a description of your conference proceedings talk, note the different field in type. You can put anything in this field.
teaching
Teaching experience 1
Undergraduate course, University 1, Department, 2014
This is a description of a teaching experience. You can use markdown like any other post.
Teaching experience 2
Workshop, University 1, Department, 2015
This is a description of a teaching experience. You can use markdown like any other post.