Sitemap
A list of all the posts and pages found on the site. For you robots out there, there is an XML version available for digesting as well.
Pages
Posts
Future Blog Post
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Blog Post number 4
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
Blog Post number 3
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
Blog Post number 2
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
Blog Post number 1
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
portfolio
Portfolio item number 1
Short description of portfolio item number 1
Portfolio item number 2
Short description of portfolio item number 2
projects
Learned Metric Index
Website: https://github.com/Coda-Research-Group/LearnedMetricIndex
PhD Project: Similarity search index for complex data using machine learning and probability-based navigation.
AlphaFind
Website: https://alphafind.ics.muni.cz/
Fast structure-based similarity search across 500M+ predicted protein chains and domains (AlphaFold DB, TED).
MD-Find
Website: https://www.mdfind.dyn.cloud.e-infra.cz/
Similarity search engine for molecular dynamics simulation files of protein data, indexing thousands of trajectories from public repositories.
publications
Learned indexing in high-dimensional data Dissertation
Published in Ph.D. dissertation, Masaryk University, 2026
AlphaFind v2: Similarity Search in AlphaFold DB and TED Domains across Structural Contexts
Published in Nucleic Acids Research, 2026
MolViewStories: Interactive molecular storytelling
Published in Protein Science, 2026
talks
AlphaFind v2: Fast Structure-Based Search in Predicted Protein Chains and Domains Permalink
Published:
teaching
Teaching experience 1
Undergraduate course, University 1, Department, 2014
This is a description of a teaching experience. You can use markdown like any other post.
Teaching experience 2
Workshop, University 1, Department, 2015
This is a description of a teaching experience. You can use markdown like any other post.