MD-Find
Website: https://www.mdfind.dyn.cloud.e-infra.cz/
Similarity search engine for molecular dynamics simulation files of protein data, indexing thousands of trajectories from public repositories.
Projects
AlphaFind
Website: https://alphafind.ics.muni.cz/
Fast structure-based similarity search across 500M+ predicted protein chains and domains (AlphaFold DB, TED).
Learned Metric Index
Website: https://github.com/Coda-Research-Group/LearnedMetricIndex
PhD Project: Similarity search index for complex data using machine learning and probability-based navigation.